Preloader

Tandem Mass Tag labelling quantitative acetylome analysis of differentially modified proteins during mycoparasitism of Clonostachys chloroleuca 67–1

  • 1.

    Allfrey, V. G. & Mirsky, R. F. E. Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc. Natl. Acad. Sci. USA 51, 786–794 (1964).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 2.

    L’Hernault, S. W. & Rosenbaum, J. L. Chlamydomonas α-tubulin is post-translationally modified in the flagella during flagellar assembly. J. Cell Biol. 97, 258–263 (1983).

    Article 

    Google Scholar 

  • 3.

    Gu, W. & Roeder, R. G. Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell 90, 595–606 (1997).

    CAS 
    Article 

    Google Scholar 

  • 4.

    Onyango, P., Celic, I., McCaffery, J. M., Boeke, J. D. & Feinberg, A. P. SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylase localized to mitochondria. Proc. Natl. Acad. Sci. USA 99, 13653–13658 (2002).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 5.

    Schwer, B., North, B. J., Frye, R. A., Ott, M. & Verdin, E. The human silent information regulator (Sir)2 homologue hSIRT3 is a mitochondrial nicotinamide adenine dinucleotide-dependent deacetylase. J. Cell Biol. 158, 647–657 (2002).

    CAS 
    Article 

    Google Scholar 

  • 6.

    North, B. J., Marshall, B. L., Borra, M. T., Denu, J. M. & Verdin, E. The human Sir2 ortholog, SIRT2, is an NAD+-dependent tubulin deacetylase. Mol. Cell 11, 437–444 (2003).

    CAS 
    Article 

    Google Scholar 

  • 7.

    Kim, G. W. & Yang, X. J. Comprehensive lysine acetylomes emerging from bacteria to humans. Trends Biochem. Sci. 36, 211–220 (2011).

    CAS 
    Article 

    Google Scholar 

  • 8.

    Choudhary, C., Weinert, B. T., Nishida, Y., Verdin, E. & Mann, M. The growing landscape of lysine acetylation links metabolism and cell signalling. Nat. Rev. Mol. Cell Biol. 15, 536–550 (2014).

    CAS 
    Article 

    Google Scholar 

  • 9.

    Mersfelder, E. L. & Parthun, M. R. The tale beyond the tail: Histone core domain modifications and the regulation of chromatin structure. Nucleic Acids Res. 34, 2653–2662 (2006).

    CAS 
    Article 

    Google Scholar 

  • 10.

    Li, B., Carey, M. & Workman, J. L. The role of chromatin during transcription. Cell 128, 707–719 (2007).

    CAS 
    Article 

    Google Scholar 

  • 11.

    Ding, S. L. et al. The Tig1 histone deacetylase complex regulates infectious growth in the rice blast fungus Magnaporthe oryzae. Plant Cell 22, 2495–2508 (2010).

    CAS 
    Article 

    Google Scholar 

  • 12.

    Choi, S. M. et al. HDA19 is required for the repression of salicylic acid biosynthesis and salicylic acid-mediated defense responses in Arabidopsis. Plant J. 71, 135–146 (2012).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 13.

    Kong, L., Qiu, X., Kang, J., Wang, Y. & Wang, Y. A Phytophthora effector manipulates host histone acetylation and reprograms defense gene expression to promote infection. Curr. Biol. 27, 1–11 (2017).

    Article 

    Google Scholar 

  • 14.

    Schwer, B., Bunkenborg, J., Verdin, R. O., Andersen, J. S. & Verdin, E. Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2. Proc. Natl. Acad. Sci. USA 103, 10224–10229 (2006).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 15.

    Zhang, J., Shi, X., Li, Y., Kim, B. J. & Qin, J. Acetylation of Smc3 by Eco1 is required for S phase sister chromatid cohesion in both human and yeast. Mol. Cell 31, 143–151 (2008).

    CAS 
    Article 

    Google Scholar 

  • 16.

    Shimazu, T., Hirschey, M. D., Huang, J. Y., Ho, L. T. Y. & Verdin, E. Acetate metabolism and aging: An emerging connection. Mech. Ageing Dev. 131, 511–516 (2010).

    CAS 
    Article 

    Google Scholar 

  • 17.

    Imai, S. I. & Guarente, L. T. years of NAD-dependent SIR2 family deacetylases: Implications for metabolic diseases. Trends Pharmacol. Sci. 31, 212–220 (2010).

    CAS 
    Article 

    Google Scholar 

  • 18.

    Albaugh, B. N., Arnold, K. M. & Denu, J. M. Kat (ching) metabolism by the tail: Insight into the links between lysine acetyltransferases and metabolism. ChemBioChem 12, 290–298 (2011).

    CAS 
    Article 

    Google Scholar 

  • 19.

    Guan, K. L. & Xiong, Y. Regulation of intermediary metabolism by protein acetylation. Trends Biochem. Sci. 36, 108–116 (2011).

    CAS 
    Article 

    Google Scholar 

  • 20.

    Leonard, G. The logic linking protein acetylation and metabolism. Cell Met. 14, 151–153 (2011).

    Article 

    Google Scholar 

  • 21.

    Zhang, K., Zheng, S. Z., Yang, J. S., Chen, Y. & Cheng, Z. Y. Comprehensive profiling of protein lysine acetylation in Escherichia coli. J. Proteome Res. 12, 844–851 (2013).

    CAS 
    Article 

    Google Scholar 

  • 22.

    Kim, D. et al. The acetylproteome of Gram-positive model bacterium Bacillus subtilis. Proteomics 13, 1726–1736 (2013).

    CAS 
    Article 

    Google Scholar 

  • 23.

    Kim, S. C. et al. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol. Cell 23, 607–618 (2006).

    CAS 
    Article 

    Google Scholar 

  • 24.

    Jensen, O. N. Interpreting the protein language using proteomics. Nat. Rev. Mol. Cell Biol. 7, 391–403 (2006).

    CAS 
    Article 

    Google Scholar 

  • 25.

    Choudhary, C. & Mann, M. Decoding signalling networks by mass spectrometry-based proteomics. Nat. Rev. Mol. Cell Biol. 11, 427–439 (2010).

    CAS 
    Article 

    Google Scholar 

  • 26.

    Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T. & Choudhary, C. Proteomic investigations reveal a role for RNA processing factor Thrap3 in the DNA damage response. Mol. Cell 46, 212–225 (2012).

    CAS 
    Article 

    Google Scholar 

  • 27.

    Liao, G. J., Xie, L. X., Li, X., Cheng, Z. Y. & Xie, J. P. Unexpected extensive lysine acetylation in the trump-card antibiotic producer Streptomyces roseosporus revealed by proteome-wide profiling. J. Proteom. 106, 260–269 (2014).

    CAS 
    Article 

    Google Scholar 

  • 28.

    Zhou, X. W., Qian, G. Y., Yi, X. L., Li, X. F. & Liu, W. D. Systematic analysis of the lysine acetylome in Candida albicans. J. Proteome Res. 15, 2525–2536 (2016).

    CAS 
    Article 

    Google Scholar 

  • 29.

    Zuo, R. F. Study on the Function of Histone Acetyltransferase MoHat1 and Five bZIP Transcription Factors in Rice Blast Fungi; Nanjing Agricultural University Press: Nanjing, China, 32–46 (2014).

  • 30.

    Yin, Z. Y. et al. Histone acetyltransferase MoHat1 acetylates autophagy-related proteins MoAtg3 and MoAtg9 to orchestrate functional appressorium formation and pathogenicity in Magnaporthe oryzae. Autophagy 15, 1234–1257 (2019).

    CAS 
    Article 

    Google Scholar 

  • 31.

    Zhou, S. Y., Yang, Q. Q., Yin, C. F., Liu, L. & Liang, W. X. Systematic analysis of the lysine acetylome in Fusarium graminearum. BMC Genom. 17, 1019 (2016).

    Article 

    Google Scholar 

  • 32.

    Wang, Z. K., Cai, Q., Liu, J., Ying, S. H. & Feng, M. G. Global insight into lysine acetylation events and their links to biological aspects in Beauveria bassiana, a fungal insect pathogen. Sci. Rep. 7, 44360 (2017).

    ADS 
    Article 

    Google Scholar 

  • 33.

    Tian, T., Li, S. D. & Sun, M. H. Synergistic effect of dazomet soil fumigation and Clonostachys rosea against cucumber Fusarium wilt. Phytopathology 104, 1314–1321 (2014).

    Article 

    Google Scholar 

  • 34.

    Ma, G. Z. et al. Inhibition and protective activities of Gliocladium roseum 67–1 to Rhizoctonia solanii. Crops 145(6), 83–86 (2011).

    Google Scholar 

  • 35.

    Sun, Z. B., Sun, M. H. & Li, S. D. Identification of mycoparasitism-related genes in Clonostachys rosea 67–1 active against Sclerotinia sclerotiorum. Sci. Rep. 5, 18169 (2016).

    ADS 
    Article 

    Google Scholar 

  • 36.

    Li, D. L., Lv, B. N., Tan, L. L., Yang, Q. Q. & Liang, W. X. Acetylome analysis reveals the involvement of lysine acetylation in diverse biological processes in Phytophthora sojae. Sci. Rep. 6, 29897 (2016).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 37.

    Lv, B. N., Yang, Q. Q., Li, D. L., Liang, W. X. & Song, L. M. Proteome-wide analysis of lysine acetylation in the plant pathogen Botrytis cinerea. Sci. Rep. 6, 29313 (2016).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 38.

    Yang, Y. et al. Comprehensive proteomic analysis of lysine acetylation in the foodborne pathogen Trichinella spiralis. Front. Microbial. 8, 2674 (2018).

    Article 

    Google Scholar 

  • 39.

    Lv, Y. Y. Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus. PLoS ONE 12, 0178603 (2017).

    Google Scholar 

  • 40.

    Imai, S. I. & Armstrong, C. M. Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase. Nature 403, 795–800 (2000).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • 41.

    Gut, P. & Verdin, E. The nexus of chromatin regulation and intermediary metabolism. Nature 502, 489–498 (2013).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Source link