Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA
Li Tai Fang, Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Yunfei Guo, Lijing Yao & Hugo Y. K. Lam
Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
Bin Zhu, Lei Song & Mingyi Wang
Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA
Yongmei Zhao, Keyur Talsania, Justin Lack, Tsai-Wei Shen, Cristobal Juan Vera & Ashley Walton
Center for Genomics, Loma Linda University School of Medicine, Loma Linda, CA, USA
Wanqiu Chen, Zhaowei Yang, Zhong Chen, Seta Stanbouly, Charles Wang, Xin Chen & Charles Wang
Department of Allergy and Clinical Immunology, State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
Zhaowei Yang & Jing Li
ATCC (American Type Culture Collection), Manassas, VA, USA
Liz Kerrigan, Kurt Langenbach, Maryellen de Mars, Maryellen de Mars, Liz Kerrigan & Kurt Langenbach
Computational Genomics, Genomics Research Center (GRC), AbbVie, North Chicago, IL, USA
Charles Lu, Kenneth Idler, Howard Jacob, Kenneth Idler, Howard Jacob, Charles Lu & Chris Miller
State Key Laboratory of Genetic Engineering, Human Phenome Institute, School of Life Sciences and Shanghai Cancer Center, Fudan University, Shanghai, China
Yuanting Zheng, Luyao Ren, Ying Yu, Leming Shi, Luyao Ren, Leming Shi, Ying Yu & Yuanting Zheng
Illumina Inc., Foster City, CA, USA
Erich Jaeger, Gary P. Schroth, Ogan D. Abaan, Ogan D. Abaan, Han-Yu Chuang, Ana Granat, Erich Jaeger, Ali Moshrefi, Aparna Natarajan, Gary P. Schroth & Tiffany Truong
Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA
Bao Tran, Jyoti Shetty, Yuliya Kriga, Monika Mehta, Yuliya Kriga, Arati Raziuddin, Jyoti Shetty & Bao Tran
Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology (CBIIT), National Cancer Institute, Rockville, MD, USA
Daoud Meerzaman, Cu Nguyen, Xiaopeng Bian, Qingrong Chen, Yun-Ching Chen, Daoud Meerzaman, Cu Nguyen, Fayaz Seifuddin & Chunhua Yan
Biomarker Development, Novartis Institutes for Biomedical Research, Basel, Switzerland
Virginie Petitjean, Marc Sultan, Jessica Nordlund, Virginie Petitjean & Marc Sultan
CCR Collaborative Bioinformatics Resource (CCBR), Office of Science and Technology Resources, Center for Cancer Research, Bethesda, MD, USA
Margaret Cam, Margaret Cam & Parthav Jailwala
Genentech, a member of the Roche group, South San Francisco, CA, USA
Tiffany Hung, Eric Peters, Rasika Kalamegham, Tiffany Hung, Rasika Kalamegham & Eric Peters
IMTM, Faculty of Medicine and Dentistry, Palacky University, Olomouc, Czech Republic
Jiri Drabek, Petr Vojta, Jiri Drabek & Petr Vojta
European Infrastructure for Translational Medicine, Amsterdam, the Netherlands
Jiri Drabek, Petr Vojta, Roberta Maestro, Daniela Gasparotto, Sulev Kõks, Ene Reimann, Andreas Scherer, Jessica Nordlund, Ulrika Liljedahl, Jiri Drabek, Sulev Kõks, Roberta Maestro, Jessica Nordlund, Maurizio Polano, Andreas Scherer & Petr Vojta
Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, National Cancer Institute, Unit of Oncogenetics and Functional Oncogenomics, Aviano, Italy
Roberta Maestro, Daniela Gasparotto, Roberta Maestro & Maurizio Polano
Perron Institute for Neurological and Translational Science, Nedlands, Western Australia, Australia
Sulev Kõks & Sulev Kõks
Estonian Genome Centre, Institute of Genomics, University of Tartu, Tartu, Estonia
Sulev Kõks & Ene Reimann
Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland
Andreas Scherer & Andreas Scherer
Department of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden
Jessica Nordlund & Ulrika Liljedahl
Department of Biological Sciences, Virginia Tech, Blacksburg, VA, USA
Roderick V. Jensen & Roderick V. Jensen
Bioinformatics and Computational Biology Core, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
Mehdi Pirooznia & Mehdi Pirooznia
Sentieon Inc., Mountain View, CA, USA
Zhipan Li, Don Freed, Paul Giresi & Zhipan Li
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
Chunlin Xiao, Stephen T. Sherry, Steve T. Sherry & Chunlin Xiao
Immuneering Corporation, Boston, MA, USA
Rebecca Kusko & Rebecca Kusko
Center for Biologics Evaluation and Research, FDA, Silver Spring, MD, USA
Malcolm Moos & Malcolm Moos
Center for Drug Evaluation and Research, FDA, Silver Spring, MD, USA
Eric Donaldson & Eric Donaldson
Center for Devices and Radiological Health, FDA, Silver Spring, MD, USA
Zivana Tezak, Wenming Xiao, Ozan Aygun, Eunice Lee, You Li, Sharon (Xueying) Liang, Jai Pandey, Anand Pathak, Zivana Tezak & Wenming Xiao
National Center for Toxicological Research, FDA, Jefferson, AR, USA
Baitang Ning, Weida Tong, Huixiao Hong, Tao Chen, Huixiao Hong, Corey Miles, Baitang Ning, Weida Tong, Leihong Wu & Gokhan Yavas
Department of Basic Science, Loma Linda University School of Medicine, Loma Linda, CA, USA
Penelope Duerken-Hughes & Charles Wang
10x Genomics, Pleasanton, CA, USA
Claudia Catalanotti, Shamoni Maheshwari & Joe Shuga
Translational Genomics Research Institute, Phoenix, AZ, USA
Winnie S. Liang, Jonathan Keats, Jonathan Adkins, Erica Tassone, Victoria Zismann, Timothy McDaniel, Jeffrey Trent, Jonathan Keats, Tim McDaniel & Jeff Trent
Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA
Jonathan Foox, Daniel Butler, Christopher E. Mason, Jonathan Foox & Christopher E. Mason
Pacific Biosciences, Menlo Park, CA, USA
Meredith Ashby & Yan Guo
Departments of Medicine and Pathology, University of Toledo Medical Center, Toledo, OH, USA
Thomas M. Blomquist, Jennifer A. Hipp & James C. Willey
Integrative Bioinformatics, National Institute of Environmental Health Sciences, Durham, NC, USA
Pierre Bushel, Jian-Liang Li, Brian N. Papas & Xiaojian Xu
Weill Cornell Medicine, New York, NY, USA
Fabien Campagne
Department of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA
Youping Deng
Digicon, McLean, VA, USA
Ben Ernest & Urvashi Mehra
Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS, USA
Ping Gong
SAS Institute Inc., Cary, NC, USA
Meijian Guan
Translational Medicine, Bristol Myers Squibb, Cambridge, MA, USA
Christos Hatzis
Center for Computational Toxicology and Exposure, US EPA, Durham, NC, USA
Susan Hester
Q2 Solutions—EA Genomics, Morrisville, NC, USA
Wendell Jones
Garvan Institute of Medical Research, The Kinghorn Cancer Centre, Darlinghurst, New South Wales, Australia
Bindu Kanakamedala & Timothy Mercer
Office of the Chief Scientist, Office of the Commissioner, U.S. Food and Drug Information, Silver Spring, MD, USA
Samir Lababidi
Center for Information Technology, National Institutes of Health, Bethesda, MD, USA
Xuelu Liu & Wolfgang Resch
East China Normal University, Shanghai, China
Tieliu Shi
Lymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
Louis M. Staudt
National Institute of Metrology, Beijing, China
Jing Wang
AstraZeneca, Gaithersburg, MD, USA
Jingya Wang
School of Computing Sciences and Computer Engineering, University of Southern Mississippi, Hattiesburg, MS, USA
Chaoyang Zhang
The study was conceived and designed by W.X., C.W., L. Shi, H.H., E.D., Z.T., B.N., W.T. and R.J. Biosample preparation was performed by L.K., K.L., M. Mars and T.H. NGS library preparation and sequencing was performed by W.C., Z.C., S. Stanbouly, K.I., H.J., E.J., G.P.S., Y. Zheng, B.T., Y.Y., J.S., Y.K., M. Mehat, V.P., M.S., T.H., E.P., R.K., J.D., P.V., R.M., D.G., S.K., E.R., A.S., J.N., U.L., J.W., J.L., P.D.H., C.C., S.M., J.S., J.F., D.B. and C.E.M. Data analysis was performed by L.T.F., W.X., B.Z., Y. Zhao, Z.Y., L.R., C.L., O.D.A., L. Song, J.L., T.S., K.T., D.M., C.N., M.C., S.M.E.S., M. Mohiyuddin, Y.G., L.Y., H.L., M.P., Z.L., W.S.L., J.K., J.A., E.T., V.Z., T.M. and J.T. Data management was performed by W.X., C.X. and S.T.S. The manuscript was written by L.T.F., B.Z., W.X., R.K., M. Moos, C.X., S.T.S. and Y. Zhao. W.X. managed the project.
