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A multiparametric fluorescence assay for screening aptamer–protein interactions based on microbeads

  • Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505–510 (1990).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Song, K.-M., Lee, S. & Ban, C. Aptamers and their biological applications. Sensors 12, 612–631 (2012).

    ADS 
    Article 

    Google Scholar 

  • Pehlivan, Z. S. et al. Aptamer and nanomaterial based FRET biosensors: A review on recent advances (2014–2019). Mikrochim. Acta 186, 563 (2019).

    CAS 
    Article 

    Google Scholar 

  • Nimjee, S. M., White, R. R., Becker, R. C. & Sullenger, B. A. Aptamers as therapeutics. Annu. Rev. Pharmacol. Toxicol. 57, 61–79 (2017).

    CAS 
    Article 

    Google Scholar 

  • Ellington, A. D. & Szostak, J. W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818–822 (1990).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Keefe, A. D., Pai, S. & Ellington, A. Aptamers as therapeutics. Nat. Rev. Drug Discov. 9, 537–550 (2010).

    CAS 
    Article 

    Google Scholar 

  • Rozenblum, G. T., Lopez, V. G., Vitullo, A. D. & Radrizzani, M. Aptamers: Current challenges and future prospects. Expert Opin. Drug Discov. 11, 127–135 (2016).

    CAS 
    Article 

    Google Scholar 

  • Ilgu, M. & Nilsen-Hamilton, M. Aptamers in analytics. Analyst 141, 1551–1568 (2016).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Rödiger, S. et al. A highly versatile microscope imaging technology platform for the multiplex real-time detection of biomolecules and autoimmune antibodies. Adv. Biochem. Eng. Biotechnol. 133, 35–74 (2013).

    PubMed 

    Google Scholar 

  • Ruigrok, V. J. B. et al. Kinetic and stoichiometric characterisation of streptavidin-binding aptamers. Chembiochem. Eur. J. Chem. Biol. 13, 829–836 (2012).

    CAS 
    Article 

    Google Scholar 

  • Lee, P. P., Ramanathan, M., Hunt, C. A. & Garovoy, M. R. An oligonucleotide blocks interferon-gamma signal transduction. Transplantation 62, 1297–1301 (1996).

    CAS 
    Article 

    Google Scholar 

  • Cheung, Y.-W. et al. Structural basis for discriminatory recognition of Plasmodium lactate dehydrogenase by a DNA aptamer. Proc. Natl. Acad. Sci. U. S. A. 110, 15967–15972 (2013).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Stoltenburg, R., Schubert, T. & Strehlitz, B. In vitro selection and interaction studies of a DNA aptamer targeting protein A. PLoS One 10, e0134403 (2015).

    Article 

    Google Scholar 

  • Orava, E. W., Jarvik, N., Shek, Y. L., Sidhu, S. S. & Gariépy, J. A short DNA aptamer that recognizes TNFα and blocks its activity in vitro. ACS Chem. Biol. 8, 170–178 (2013).

    CAS 
    Article 

    Google Scholar 

  • DeGrasse, J. A. A single-stranded DNA aptamer that selectively binds to Staphylococcus aureus enterotoxin B. PLoS One 7, e33410 (2012).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Ma, J. et al. Target replacement strategy for selection of DNA aptamers against the Fc region of mouse IgG. Genet. Mol. Res. GMR 12, 1399–1410 (2013).

    Article 

    Google Scholar 

  • Bock, L. C., Griffin, L. C., Latham, J. A., Vermaas, E. H. & Toole, J. J. Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 355, 564–566 (1992).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Tasset, D. M., Kubik, M. F. & Steiner, W. Oligonucleotide inhibitors of human thrombin that bind distinct epitopes. J. Mol. Biol. 272, 688–698 (1997).

    CAS 
    Article 

    Google Scholar 

  • Cheishvili, D. et al. A common promoter hypomethylation signature in invasive breast, liver and prostate cancer cell lines reveals novel targets involved in cancer invasiveness. Oncotarget 6, 33253–33268 (2015).

    Article 

    Google Scholar 

  • Jordan, M. et al. A novel targeted approach to the treatment of hemophagocytic lymphohistiocytosis (HLH) with an anti-interferon gamma (IFNγ) monoclonal antibody (mAb), NI-0501: First results from a pilot phase 2 study in children with primary HLH. Blood 126, LBA3 (2015).

    Article 

    Google Scholar 

  • Toh, S. Y., Citartan, M., Gopinath, S. C. B. & Tang, T.-H. Aptamers as a replacement for antibodies in enzyme-linked immunosorbent assay. Biosens. Bioelectron. 64, 392–403 (2015).

    CAS 
    Article 

    Google Scholar 

  • Liu, Y. & Yu, J. Oriented immobilization of proteins on solid supports for use in biosensors and biochips: A review. Microchim. Acta 183, 1–19 (2016).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Dinter, F. et al. Simultaneous detection and quantification of DNA and protein biomarkers in spectrum of cardiovascular diseases in a microfluidic microbead chip. Anal. Bioanal. Chem. 411, 7725–7735 (2019).

    CAS 
    Article 

    Google Scholar 

  • Herrmann, A., Rödiger, S., Schmidt, C., Schierack, P. & Schedler, U. Spatial separation of microbeads into detection levels by a bioorthogonal porous hydrogel for size-selective analysis and increased multiplexity. Anal. Chem. 91, 8484–8491 (2019).

    CAS 
    Article 

    Google Scholar 

  • Schmidt, C. et al. Streptavidin homologues for applications on solid surfaces at high temperatures. Langmuir ACS J. Surf. Colloids 36, 628–636 (2020).

    CAS 
    Article 

    Google Scholar 

  • Dietz, M. S., Wehrheim, S. S., Harwardt, M.-L.I.E., Niemann, H. H. & Heilemann, M. Competitive binding study revealing the influence of fluorophore labels on biomolecular interactions. Nano Lett. 19, 8245–8249 (2019).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Sass, S. et al. Binding affinity data of DNA aptamers for therapeutic anthracyclines from microscale thermophoresis and surface plasmon resonance spectroscopy. Analyst 144, 6064–6073 (2019).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Munzar, J. D., Ng, A. & Juncker, D. Duplexed aptamers: History, design, theory, and application to biosensing. Chem. Soc. Rev. 48, 1390–1419 (2019).

    CAS 
    Article 

    Google Scholar 

  • Wood, W. I., Gitschier, J., Lasky, L. A. & Lawn, R. M. Base composition-independent hybridization in tetramethylammonium chloride: A method for oligonucleotide screening of highly complex gene libraries. Proc. Natl. Acad. Sci. 82, 1585–1588 (1985).

    ADS 
    CAS 
    Article 

    Google Scholar 

  • Yan, J. et al. Advances in aptamer screening technologies. Talanta 200, 124–144 (2019).

    CAS 
    Article 

    Google Scholar 

  • Schneider, J. et al. Open source bioimage informatics tools for the analysis of DNA damage and associated biomarkers. J. Lab. Precis. Med. 4, 21 (2019).

    Article 

    Google Scholar 

  • Jurischka, C. et al. Tyramide signal amplification as universal detection method on protein coated microbeads. J. Cell. Biotechnol. 4, 15–22 (2018).

    Article 

    Google Scholar 

  • Schiebel, J. et al. Genotypic and phenotypic characteristics associated with biofilm formation by human clinical Escherichia coli isolates of different pathotypes. Appl. Environ. Microbiol. 83, e01660-e1717 (2017).

    Article 

    Google Scholar 

  • Rödiger, S. et al. Nucleic acid detection based on the use of microbeads: A review. Microchim. Acta 181, 1151–1168 (2014).

    Article 

    Google Scholar 

  • Deutschmann, C., Roggenbuck, D., Schierack, P. & Rödiger, S. Autoantibody testing by enzyme-linked immunosorbent assay-a case in which the solid phase decides on success and failure. Heliyon 6, e03270 (2020).

    Article 

    Google Scholar 

  • Rödiger, S. et al. Fluorescence dye adsorption assay to quantify carboxyl groups on the surface of poly(methyl methacrylate) microbeads. Anal. Chem. 83, 3379–3385 (2011).

    Article 

    Google Scholar 

  • Rödiger, S., Friedrichsmeyer, T., Kapat, P. & Michalke, M. RKWard: A comprehensive graphical user interface and integrated development environment for statistical analysis with R. J. Stat. Softw. 49, 1–34 (2012).

    Article 

    Google Scholar 

  • Ritz, C., Baty, F., Streibig, J. C. & Gerhard, D. Dose-response analysis using R. PLoS ONE 10, e0146021 (2015).

    Article 

    Google Scholar 

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